OMFITprofiles

Contacts: Nikolas Logan, Shaun Haskey, David Eldon, Orso Meneghini, Sterling Smith, Kathreen Thome, Lukas Kripner, Stuart Henderson, Myungwon Lee, Oak Nelson, Darin Ernst

Short Description

Advanced fitting of kinetic profiles

Keywords

Profiles, fitting, experiment

Long Description

OMFITprofiles has been used to develop a consistent tool for interfacing with, mapping, visualizing, and fitting tokamak profile measurements. OMFITprofiles is used to integrate the many diverse diagnostics on multiple tokamak devices into a regular data structure, consistently applying spatial and temporal treatments to each channel of data. Tokamak data are fundamentally time dependent and are treated so from the start, with front-loaded and logic-based manipulations such as filtering based on the identification of edge-localized modes (ELMs) that commonly scatter data. Fitting is general in its approach, and tailorable in its application in order to address physics constraints and handle the multiple spatial and temporal scales involved. Although community standard one-dimensional fitting is supported, including scale length–fitting and fitting polynomial-exponential blends to capture the H-mode pedestal, OMFITprofiles includes two-dimensional (2-D) fitting using bivariate splines or radial basis functions. These 2-D fits produce regular evolutions in time, removing jitter that has historically been smoothed ad hoc in transport applications. Profiles interface directly with a wide variety of models within the OMFIT framework, providing the inputs for TRANSP, kinetic-EFIT 2-D equilibrium, and GPEC three-dimensional equilibrium calculations. The OMFITprofiles tool’s rapid and comprehensive analysis of dynamic plasma profiles thus provides the critical link between raw tokamak data and simulations necessary for physics understanding.

Please cite the publications below if using OMFITprofiles in your workflow. Your recognition of the work that went into this is much appreciated.

Typical workflows

  • Raw data collection (the only machine dependent step)

  • Data selection by channel, subsystem, diagnostic as well as time conditions such as ELMs

  • Advanced data binning and averaging

  • Generic mapping of R-Z data to equilibrium quantities

  • Generic profiles fitting (1D radial or 2D radial + time)

  • Calculation of derived quantities

Supported devices

  • DIII-D, NSTX, C-Mod, COMPASS, KSTAR, JET, MAST, AUG

Tutorials

Contributors

List of contributors sorted by number of lines authored:

7006 Nikolas Logan
6873 Orso Meneghini
4713 Brian Grierson
4199 Shaun Haskey
3767 Fusion Bot
3750 Tomas Odstrcil
1603 Myungwon Lee
1445 David Eldon
 837 Florian Laggner
 737 Stuart Henderson
 708 Sterling Smith
 417 Brian Victor
 355 Francesco Sciortino
 320 Jorge Ferreira
 223 Giovanni Tardini
 198 Theresa Wilks
 172 Laurent Jung
 149 Galina Avdeeva
 141 Bhavin Patel
 137 Ziga Stancar
 118 Kirov, Krassimir K
 107 Jiale Chen
 107 Devon Battaglia
 106 Kathreen Thome
 103 Teobaldo Luda di Cordemiglia
  96 Garud Snoep
  79 Oak Nelson
  68 Christopher Holland
  64 Michael Brookman
  64 Karel van de Plassche
  54 Jorge Morales
  44 Lukas Kripner
  39 Darin Ernst
  29 Erik Linsenmayer
  28 Brendan Lyons
  23 Z. Anthony Xing
  20 David Weisberg
  19 David Elder
  18 Severin Denk
  17 Jisung Kang
  16 Lang Cui
  12 Colin Chrystal
  11 Matej Peterka
  10 Torrin Bechtel
   8 Bob Wilcox
   3 Jakub Urban
   2 Pablo Rodriguez
   2 Joseph McClenaghan
   1 Richard Kalling
   1 Michele Romanelli

Users

List of usernames sorted by number of module imports: meneghini, nelsonand, thomek, grierson, shaskey, bgrierson, brookmanmw, lindan, haskeysr, ashourvana, eldond, wilkstm, sciortinof, tomas, smithsp, stephanet, nlogan, nazikian, weisbergd, callahank, kathreenthome, degrandchampg, victorb, shenders, fernandezp, bykovi, houshman, mortonl, xier, ernst, knolkerm, logannc, roelofsm, hongrongjie, odstrcilt, orlov, pablorf, paz-soldan, cuil, snoepg, g2jofe, chenj, kripner, xingz, hinsone, vlad, jacksona, shafer, huqiming, davisem, mcclenaghanj, herfindalj, sciortino, bortolon, krietedm, samuellc, sweeneyrm, liud, chenxi, denk, austinm, gagek, david, duxiaodi, laggnerf, leem, kinsey, pipern, vaezip, abbatej, howardnt, prattq, likai, masliner, mordijck, odstrcil, zeng, unterbee, vanzee, zhaob, adiallo, g2orm, sungc, zamperinis, gugliadav, kyungjin, vankampenr, zstancar, bgriers, casalil, holland, lig, lyonsbc, beidlerm, chabanr, evans, parkjm, pbonofig, taylornz, yanz, diems, jorge, lizj, luoc, peterka, choiwilkie, jaulmes, lizeyu, ohtaniy, orso, snyder, soukhan, wakatsukit, wanghuiqian, blyons, collinscs, karel, ludat, urban, aaronho, burkem, capitainetema, majorm, wuyifan, xiangjian, boedo, eemdee, jianx, kimh, lib, lmorton, marinic, marinoni, montesk, mosera, ssmith, willensdorferm, wwallace, camicollins, diallo, dingsiye, eggertw, halfmoon, hengl, izacardo, jmsfer, jsachdev, montes, powersc, wehnerw, zehuag, Trevisan, abramst, bardoczil, dbattagl, dernst, effenbergf, fila, fscotti, guterlj, huwen, hwong, lanctot, mitosinkova, moyer, munarettos, murakami, nicholsj, okabay, pacedc, panicid, pankin, reac, renyang, schmitzl, shoushar, sulymana, trevisan, truongd, turcof, vailp, wumuq, yuguanying, zhangt, Morton, aashourv, adwiteey, afil, ajsen, banerjees, baradakk, batteya, brookman, buchanj, cengher, chrystal, clementm, crocker, denks, devitre, elder, fascianam, g2jmoral, groth, guttenfe, halfmoonm, holcomb, igochinev, inyong, izzov, jarvinena, jriqueze, jurban, jwhughes, kimkyungjin, kkirov, kplass, lijx, logan, lupinl, luxin, lvovskiya, margomw, markovic, merlog, mfitz, moynihanc, muscatel, nave, neisert, nfil, nornbergm, npablant, nthoward, oizacard, panck, podolnik, psinha, qianjp, ramanr, renq, renql, rhodes, rkalling, rosenthala, schaeferc, shirakid, shisy, skvara, slendebroekt, smithdr, solomon, stagnerl, sunyouwen, templed, twilks, vallar, wademr, waij, wangh, wangxin, wangy, wangyh, wangzhirui, wilcoxr, wukitchj, wwehner, xzhang, zegere, zhangjiayuan, zhangjie, zhangx, zywickib